Tobias Schmidt

Prosit: 1000 citations Yes, my most known (shared) first authorship publication beat more than 1000 citations.

Faster (semi)-release builds My initial release build setup was too brutal in larger projects [profile.release] opt-level = 3 debug = false panic = "unwind" lto = true codegen-units = 1 strip = true I switched now for (semi)-release builds, so fast inte…

MapToPoster MapToPoster is a Python tool that transforms city maps into minimalist poster designs.

Read books of 2026 Archmagos by Guy Haley Dungeon Crawler Carl: Dungeon Crawler Carl by Matt Dinniman Dungeon Crawler Carl: Carl's Doomsday Scenario by Matt Dinniman Dungeon Crawler Carl: The Dungeon Anarchist's Cookbook by Matt Dinniman (21.01.2026) Dung…

Running cargo deny in CI/CD flagged a license compatibility issue in mzcore, a Rust library for mass spectrometry data.

webR 0.5.7 shipped on November 13, 2025.

I decided to get myself a new top for my workbench and install proper bench dog holes.

Built a Python parser that extracts questions from Bavarian fishing exam PDFs and generates Anki study decks.

Smaller fastas UniProt's TrEMBL database is massive.

Bitnami rug pull Broadcom is ending free access to Bitnami container images starting August 2025.

Git setup for terraform Terraform modules from private GitLab repositories require authentication.

Specifity IDs of Unimod Always keep in mind that the specificty ID is not a stable ID between unimod version, therefore start using the unimod-watcher, see Automated Unimod Database Tracking with GitHub Actions.

Let's plot in C++ Sometimes you want to just plot a simple thing in C++, but it's complicated.

First test of a new hand plane I got myself a No. 62 Low Angle Jack Plane when last time visiting the US for ASMS 2025.

After learning about R in the browser, I wanted to see if Python in the browser works equally well.

Automated Unimod Database Tracking with GitHub Actions Unimod provides protein modification data essential for mass spectrometry workflows.

When attending a Dagstuhl seminar, you are randomly assigned a seat for lunch and dinner, to have a high chance to talk to everyone and not sticking to your peer group.

WebR Integration with Zola This post demonstrates a new WebR shortcode integration for this Zola blog.

Adjusting robots.txt for the AI era Following the recommendations of ai.robots.txt and added their content to my templates/robots.txt.

Best TV series 2025 The Day of the Jackal It stays very close to the first movie Jackal while also reusing ideas from the original book The Day of the Jackal .

RSS feeds for github I didn't find a lot of information on offical pages of github about it, but this blog post explains how to generate RSS feeds for various entities on github. /* Repo releases */ https://github.com/:owner/:repo/releases.atom /* Repo…

Gitlab setup for dependency access We want to access other repositories within a gitlab organization.

Cargo setup for private Rust dependencies on Gitlab All the explanations on the internet on how to rewrite dependencies to use https instead of ssh are wrong.

Fun with pride datasets PRIDE offers a downloadable JSON file containing all available datasets.

vimrc set·noswapfile↵ set·list↵ set·listchars=space:·,tab:>-,eol:↵↵ set·hlsearch↵ "Remove all trailing whitespace by pressing F5 nnoremap <F5> :let _s=@/<Bar>:%s/\s\+$//e<Bar>:let @/=_s<Bar><CR>

Happy helm Don't forget to remove trailing whitespaces!

NMAP to the rescue via dns-service-discovery sudo nmap -sU --script dns-service-discovery -p 5353 192.168.0.0/24

Definite guide for Shiny applications with Renv (2024) Setup It happens more often than one might think that you need an R/Shiny server dockerized.

AI-powered analysis of bottom-up proteomics data with CHIMERYS The core concept of proteomic data analysis is matching experimental spectra to a peptide representation derived from a protein sequence database.

A B C D E F G 1 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 Rosmarin/Rosemary 30-01-24 Schwarzkiefer 11-01-24 Basil 11-01-24 🌱 2 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 🌱 Thymian/Thyme 30-01-24 🌱 Schwarzkief…

A B C D E F G 1 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 Rosmarin/Rosemary 30-01-24 Schwarzkiefer 11-01-24 Basil 11-01-24 🌱 2 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 🌱 Thymian/Thyme 30-01-24 🌱 Schwarzkief…

A B C D E F G 1 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 Rosmarin/Rosemary 30-01-24 Schwarzkiefer 11-01-24 Basil 11-01-24 🌱 2 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 🌱 Thymian/Thyme 30-01-24 🌱 Schwarzkief…

A B C D E F G 1 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 Rosmarin/Rosemary 30-01-24 Schwarzkiefer 11-01-24 🌱 Basil 11-01-24 🌱 2 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 🌱 Thymian/Thyme 30-01-24 🌱 Schwarzki…

A B C D E F G 1 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 Rosmarin/Rosemary 30-01-24 Schwarzkiefer 11-01-24 🌱 Basil 11-01-24 🌱 2 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 🌱 Thymian/Thyme 30-01-24 Schwarzkief…

Turner I've visited the Turner exhibition in the Lenbauchhaus in Munich last Tuesday.

A B C D E F G 1 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 Schwarzkiefer 11-01-24 Basil 11-01-24 🌱 2 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 🌱 Cactus 11-01-24 🌱 Schwarzkiefer 11-01-24 Basil 11-01-24 🌱 3 Cactus 11-01-24 Cactus…

A B C D E F G 1 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 Schwarzkiefer 11-01-24 Basil 11-01-24 🌱 2 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 Cactus 11-01-24 Schwarzkiefer 11-01-24 Basil 11-01-24 🌱 3 Cactus 11-01-24 Cactus 11-0…

Setup CI for a minimal Rust project I've settled on using Rust as the programming language to generate a beautiful calendar overview (as a BMP).

Idea The idea of a personal calendar that does not require the useage of a smartphone has always been very intriguing.

I'm invited to join the Dagstuhl Seminar 23301 Computational Proteomics.

...and the winner for the hardest tool to find when using basically any internet search engine...USE Universal Spectrum Explorer Link

Abstract We developed DLOmix-serving, an open-source and modular machine learning (ML) inference server for biological data based on NVIDIA Triton.

Preparation {{< gdocs src="https://docs.google.com/presentation/d/e/2PACX-1vQRmSdF3O5lwkK0UrBr3kGaNnJ5iGGoBLtCTnoswj4KH4K4qW0NF5ShlGGD0kWeL8Avaj2IHUaqMwk9/embed?

Sometimes you have this deep desire to run your fancy neural network while you're on the go with just an battery pack.

Setting up and analyzing MRM/PRM assays require prior information on the retention times and fragmentation spectra of peptides.

European Bioconductor Meeting 2018 iSEE rlc