Creează un cont pentru a te abona la acest blog și a-i urmări articolele pe pagina Lectură.
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Quantitation of vector uptake reveals non-Poissonian transfection dynamics in Plasmodium falciparum
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Plasmodium knowlesi as a model system for characterising Plasmodium vivax drug resistance candidate genes
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Landscape of the Plasmodium interactome reveals both conserved and species-specific functionality
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Genome-scale identification of essential metabolic processes for targeting the Plasmodium liver stage
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BigGAN interpolations
The state of the art in image generation is BigGAN.
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Adventures with InfoGANs: towards generative models of biological images (part 2)
In the last post I introduced neural networks, generative adversarial networks (GANs) and InfoGANs.
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Adventures with InfoGANs: towards generative models of biological images (part 1)
I recently began an AI Residency at Google, which I am enjoying a great deal.
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How I stumbled upon a novel genome for a malaria-like parasite of primates
Sometimes in science you come across things that are definitely interesting, and useful, but which you don’t have time to write up properly for one reason or another.
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Saving 99.5%: automating a manual microscope with a 3D printed adapter
**TL;DR: **Some 3D-printing hackery can create an automated microscope stage from a manual stage for ~0.5% of the cost from the manufacturer.
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PlasmoTron: an open-source platform for automated culture of malaria parasites
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New beginnings
Thesis PDF
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PhenoPlasm: a database of disruption phenotypes for malaria parasite genes
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Functional profiling of a Plasmodium genome reveals an abundance of essential genes
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Petition grapher
The houses of parliament in the UK host a website of petitions.
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Synergistic malaria vaccine combinations identified by systematic antigen screening
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PlasmoTron: an open-source platform for automated culture of malaria parasites
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PhenoPlasm: a database of disruption phenotypes for malaria parasite genes
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Open hardware for random access plate storage
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Functional profiling of a Plasmodium genome reveals an abundance of essential genes
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The Up-Goer Five Text Editor
Prompted by a friend to explain my PhD in the style of XKCD #1133, I built the Up-Goer Five Text Editor.
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SRAstats
A visualisation of the ever expanding number of bases in the sequence read archive
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Mixology
Mixology is a tool to help you calculate the required masses and volumes of laboratory solutions.
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Gensplore
Automatically generate citations from free text with GPT-3
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EvenSampling
I was seconded to the Wellcome Sanger Institute at a time when almost every positive SARS-CoV-2 sample was being sent there for potential genomic surveillance.
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Codon2Nucleotide
A small tool to look up nucleotides from codon positions for SARS-CoV-2 and vice-versa.
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CiteAnything
Automatically generate citations from free text with GPT-3
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Plasmodium knowlesi genome sequences from clinical isolates reveal extensive genomic dimorphism
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Investigating the Plasmodium invadome with high-throughput reverse genetics
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How synthetic biology will reconsider natural bioluminescence and its applications
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The Up-Goer Five Text Editor
When Randall Monroe released the amazing Up-Goer Five comic, I was inspired to hack together a customised editor so that I could explain my own research in the limited vocabulary of the thousand most common words.
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(Social) media
During the SARS-CoV-2 pandemic I attempted to make data on variants, antibodies, and other things accessible to a general audience, partly through the traditional media, and also by sharing graphs and multimedia through social media.
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iGEM
The international genetic engineered machine competition (iGEM) was my first taste of proper experimental science, and I still have a fondness for synthetic biology.